SARS-CoV-2 coronavirus spike protein gene variants with N501T and G142D mutation dominated infections in US minks

We analyzed all animal-derived (977), all Canadian (19,529) and US (173,277) SARS-CoV-2 sequences deposited in GISAID from December 2019 to March 12, 2021, and identified 2 dominant novel variants, the N501T-G142D variant and N501T-G142D-F486L variant, in the US mink-derived SARS-CoV-2 sequences.  More...

Hong Kong: 51 coronavirus infections on single flight from India

A genetic study of viral samples from infected passengers on a flight into Hong Kong later found to have a record number of Covid-19 cases will be undertaken to determine whether in-flight transmission or quarantine facilities were to blame, with implications on tighter protocols required to contain such spikes.  More...

Hong Kong: coronavirus transmission linked to quarantine hotel door hooks used for meal deliveries

Hong Kong’s first community infection of a mutant Covid-19 strain involved the South African variant, officials revealed on Tuesday, with transmission likely to have taken place at a quarantine hotel via door hooks used by staff to deliver meal boxes to guests.  More...

India: B.1.617 now at 61% of coronavirus genome samples in Maharashtra – was ~20% just one month ago

The National Institute of Virology (NIV), Pune, has shared data with laboratories in Maharashtra showing that of 361 Covid-19 samples taken in Maharashtra from January to March and genome sequenced, 61% or 220 had the double mutation E484Q and L452R, now classified as B.1.617 lineage.  More...